[Quiz] Comparative microbiome analysis
How to search the literature and next-generation sequencing(NGS) database How to download NGS data How to analyze taxonomic profiles of microbiome data How to compare
How to search the literature and next-generation sequencing(NGS) database How to download NGS data How to analyze taxonomic profiles of microbiome data How to compare
Install SRA toolkit on your computer To download any file from the NCBI SRA database, you need to install SRA toolkit software from NCBI SRA Toolkit.
Majority of microbiome taxonomic profile data are based on 16S rRNA gene targetting bacteria. In this document, I will explain how to search and locate
Technical document from CJ Bioscience, Inc. Title: Experimental protocol for 16S rRNA gene-based microbiome sequencing using Illumina iSeq 100 Sequencing System Document version: 1.0 Background
CJ Bioscience’s Mission Statement: “Provide the necessary microbiological information to the specialists and the general public” About CJ Bioscience, Inc. CJ Bioscience is a leading
Definition The Species Core Genome (SCG) is the artificially generated genome sequence that contains the set of core genes within a species. How to construct
Jon Jongsik Chun, Ph. D. 천종식/千宗湜 Affiliations: Full-tenured professor at School of Biological Sciences, Seoul National University, Seoul, South Korea CEO & founder, CJ Bioscience,
Microbiome standards are important both for the evaluation and effective standardization of methodologies used in microbiome sequencing and bioinformatics analysis. In this document, the genomes
TrueBacTM ID upload center currently supports two types of sequence files, namely, FASTA, and FASTQ file(s) (single and paired-end). All these files can be uploaded
The following data were processed by CJ Bioscience’s 16S Microbiome Profiling Service with EzBioCloud database. You can access the taxonomic profiles without login. Sample NGS
Misidentified or incompletely identified bacterial genome sequences appear frequently in public reference databases. These databases can be significantly improved by genome-based identification against an up-to-date, systematically curated
A reliable database is frequently updated, and most importantly, it is systematically organized by best practices with regards to taxonomic classification of prokaryotic organisms. This
천종식 / Jon Jongsik Chun (주) CJ 바이오사이언스 대표이사 / 서울대학교 생명과학부 교수 / 한국과학기술한림원 정회원 Google Scholar 페이지 마이크로바이옴에 대한 브런치(블로그) 한겨레신문 연재 <천종식의
EzBioCloud offers the following applications for microbial genomics: 16S-based ID This service was previously found under the “Identify” menu. Input data is a single 16S
This page contains example 16S rRNA sequences of the human gut microbiota. Data was generated by the conventional Sanger capillary sequencing method and published by
Discover Biomarkers Facilitating Anti-PD-L1 Efficacy The gut microbiota plays an important role in shaping systemic immune responses. In a study published in the journal Science,
Several standards products are available to validate 16S microbiome sequencing procedures. They are usually a mixture of genomic DNAs or whole cells from different species
“programPath” file is a simple text file containing paths of the required external program. For example, all external programs are included in the PATH, it
There is significant confusion between bacterial type strains and reference strains. The type strain is defined in the context of formal bacterial taxonomy whereas reference
In descriptive statistics, a box plot or boxplot is a visualization method for graphically depicting groups of numerical data through their quartiles. Here, we will
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