Type strain and reference strain
There is significant confusion between bacterial type strains and reference strains. The type strain is defined in the context of formal bacterial taxonomy whereas reference
There is significant confusion between bacterial type strains and reference strains. The type strain is defined in the context of formal bacterial taxonomy whereas reference
In descriptive statistics, a box plot or boxplot is a visualization method for graphically depicting groups of numerical data through their quartiles. Here, we will
Prokaryotic (bacterial or archaeal) species are now generally defined by genomic methods such as average nucleotide identity (ANI). A genomospecies is a species that can be
The EzBioCloud Genome Database is a part of EzBioCloud.net. It is maintained by CJ Bioscience, Inc. to provide best-curated genome database of Bacteria and Archaea.
A Complementary CG (comparative genomics) set is a CG set that is complementarily provided by the EzBioCloud team to the users of the Whole Genome
MTP (Microbiome Taxonomic Profile) is a unit of data that contains the taxonomic profile of a sample. At present, we provide MTP for bacterial and
What is the zZ-format? zZ format is typically composed by zZ+unique id or accesscion+zZ (e.g. zZCP001758zZ or zZ12494zZ). These zZ-formatted labels are used in plain text
“Taxonomic group” in EzBioCloud 16S database Even though 16S rRNA gene has been widely used in the classification and identification of Bacteria and Archaea, it has
A plasmid is a DNA molecule that is not chromosomal or extra-chromosomal. It is found in Bacteria and Archaea, and not essential to survival. A
Clusters of Orthologous Groups (COGs) are sets of orthologous protein-coding sequences that can be used to rapidly assign functional annotations to whole genome sequences. In
Pairwise DNA sequence alignment is achieved by adding gaps (-) into sequences, so two sequences are aligned each other according to their homology. Two bases aligned
The following color codes are used in EzBioCloud service to indicate major bacterial phyla. The below figure represents bacterial diversity based on 16S rRNA gene
A pseudogenome is a virtual, artificial concatemer of all assembled contigs from sequencing a particular genome. It is computationally generated after sequencing a genome, and
The genome map is a circular representation of one or several genomes that provides a quick and easy way to spot global patterns, large features,
This data field contains the original strain labels from genome projects obtained from public databases (e.g. Genbank) or one that was entered by a user
In prokaryotes, an Intergenic region is a stretch of genome located between genes (also called “spacer”). In statistical analysis, the space between two adjacent CDSs
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