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COG Colors

Clusters of Orthologous Groups (COGs) are sets of orthologous protein-coding sequences that can be used to rapidly assign functional annotations to whole genome sequences. In

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[OAU] Mac OSX

Step-by-step guide for Apple Mac OSX users First, download necessary files OAU.jar file from here. USEARCH 32bit version for OSX from here. Example file from

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[OAU] Manual

Contents About Installation Options Single ANI calculation example Multiple ANI calculation example Contact About OAU is a command line tool for calculating OrthoANI values using

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[EzEditor2] Tutorial

Contents What is EzEditor2? EzEditor2 is a nucleotide and amino acid sequence editor that can be used along with EzBioCloud’s Identify and comparative genomics service.

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[EzEditor2] Installation

Installation of EzEditor2 and related programs EzEditor2 is a JAVA program and requires other external programs to run together. Install the followings before running EzEditor2 program.

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Pseudogenome

A pseudogenome is a virtual, artificial concatemer of all assembled contigs from sequencing a particular genome. It is computationally generated after sequencing a genome, and

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Genome Map

The genome map is a circular representation of one or several genomes that provides a quick and easy way to spot global patterns, large features,

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Genome annotation

The analysis of all bacterial genome starts with genome annotation.  This process can be divided into two steps: Gene-finding step and Functional Annotation step. “Gene-finding”

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