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Pan-genome curve

The Pan/Core-genome curves are calculated from Pan-genome Orthologous Groups (POGs) in the data sets. For generating “Pan-genome”, please visit here. For Pan-genome Orthologous Groups, please visit

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Genomes in this data set

This table contains the following information (only selected columns are explained): Title of column Description  Download CLG CLG is a data file with a special

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CLgenomics Software

CLgenomics is a standalone desktop software specifically designed for bacterial genome analysis. This program has a powerful multi-genome browser, which enables rapid and responsive exploration

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Pan-genome analysis

A pan-genome is a union of the protein-coding genes (=CDS) in a given set of genomes. Generally, building a pan-genome starts from a set of annotated

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Ortholog and its detection

Definition of Homology, Orthology and Paralogy Homology is a term used when two genes share a common ancestor. The two genes are considered “homologous” or “not homologous” depending

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Intergenic region

In prokaryotes, an Intergenic region is a stretch of genome located between genes (also called “spacer”). In statistical analysis, the space between two adjacent CDSs

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Gene frequency plot in pan-genome

All potential orthologous protein-coding  genes (=CDSs) are clustered into non-redundant gene sets after pan-genome calculation to generate “Pan-genome Orthologous Groups (POGs)”. Obviously, a core part

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About EzBioCloud.net

EzBioCloud is ChunLab’s data and analytics portal focusing on taxonomy, ecology, genomics, metagenomics, and microbiome of Bacteria and Archaea. The service runs on the Amazon

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