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Category: Glossary

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Box plot

In descriptive statistics, a box plot or boxplot is a visualization method for graphically depicting groups of numerical data through their quartiles. Here, we will

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Genomospecies

Prokaryotic (bacterial or archaeal) species are now generally defined by genomic methods such as average nucleotide identity (ANI). A genomospecies is a species that can be

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zZ-format

What is the zZ-format? zZ format is typically composed by zZ+unique id or accesscion+zZ (e.g. zZCP001758zZ or zZ12494zZ). These zZ-formatted labels are used in plain text

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Taxonomic group

“Taxonomic group” in EzBioCloud 16S database Even though 16S rRNA gene has been widely used in the classification and identification of Bacteria and Archaea, it has

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COG Colors

Clusters of Orthologous Groups (COGs) are sets of orthologous protein-coding sequences that can be used to rapidly assign functional annotations to whole genome sequences. In

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Pseudogenome

A pseudogenome is a virtual, artificial concatemer of all assembled contigs from sequencing a particular genome. It is computationally generated after sequencing a genome, and

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Genome Map

The genome map is a circular representation of one or several genomes that provides a quick and easy way to spot global patterns, large features,

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Intergenic region

In prokaryotes, an Intergenic region is a stretch of genome located between genes (also called “spacer”). In statistical analysis, the space between two adjacent CDSs

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