This is a collection of articles and resources for prokaryotic taxonomy and microbiome study. This is developed by Jon Jongsik Chun at Seoul National University, and please feel free to use it for your own research or courses you teach.

Content

Prokaryotic Taxonomy

• Bacterial species concept
• Bacterial taxonomy 101
• Bacterial nomenclature 101
• Bacterial identification 101
  • [Tutorial] How to identify bacteria using a single Sanger sequence
  • [Quiz] Comparing BLAST and EzBioCloud search
  • [Quiz] Identification of bacterium in a probiotic product

Microbiome

• 16S gene-based microbiome taxonomic profiling (MTP)
  • [Tutorial] Discover Biomarkers Facilitating Anti-PD-L1 Efficacy (Comparing microbiome of two mouse groups)
• Shotgun microbiome profiling

by Jon Jongsik Chun, CEO CJ Bioscience, Inc. & Prof., Seoul National Univ.

Last edited on Nov. 3, 2018