Powered by Precision, Driven by Quality

Original/User’s Label of Genome

Subscribe To Our Newsletter

Get updates and learn from the best

This data field contains the original strain labels from genome projects obtained from public databases (e.g. Genbank) or one that was entered by a user in the case of private genome projects. CJ Bioscience uses the combination of fast search algorithms and robust OrthoANI calculation to identify each public or private genomes. Often, the taxonomic identity of a genome is different from what’s labelled by public databases or creator of the data. In EzBioCloud, we uses correct taxonomic names, wherever possible. However, the original labels are also preserved and provided so users are not confused.

Below is an example of wrong labels in Genbank:

Genome with the accession of GCF_001055215.1 is labeled as “Acinetobacter baumannii” in Genbank database. After phylogenomic comparison with type/reference strains using OrthoANI (see the below figure), it is clear that this genome should be named “Acinetobacter bereziniae“. The OrthoANI value between the type strain of Acinetobacter bereziniae and GCF_001055215.1 is 98.05%, which is higher than the species boundary proposed by Lee et al. (2015).

acinetobacter.PNG

Last updated on May 13th, 2016 (EK)

Subscribe To Our Newsletter

Get updates and learn from the best

More To Explore

How to download public SRA Run data

Install SRA toolkit on your computer To download any file from the NCBI SRA database, you need to install SRA toolkit software from NCBI SRA Toolkit.

About EzBioCloud.net

EzBioCloud is CJ Bioscience’s data and analytics portal focusing on taxonomy, ecology, genomics, metagenomics, and microbiome of Bacteria and Archaea. The service runs on the

Share This Post

Share on facebook
Share on linkedin
Share on twitter
Share on email
small_c_popup.png

Have a Question? Let's have a chat?

We're here to answer any question you might have

small_c_popup.png

Have a Question? Let's have a chat?

We're here to answer any question you might have

small_c_popup.png

Stay up to date

Keep up with our latest developments