True taxonomic identities of ATCC Microbiome Standards
American Type Culture Collection (ATCC) commercially provides several standard products for microbiome sequencing. Often their taxonomic label is not correct due to the technical limitation
Tag: Curated database
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Genome-based Identification for Improving Reference Databases
Misidentified or incompletely identified bacterial genome sequences appear frequently in public reference databases. These databases can be significantly improved by genome-based identification against an up-to-date, systematically curated
Check List for 16S-based Microbiome Analysis
A reliable database is frequently updated, and most importantly, it is systematically organized by best practices with regards to taxonomic classification of prokaryotic organisms. This
EzBioCloud Apps
EzBioCloud offers the following applications for microbial genomics: 16S-based ID This service was previously found under the “Identify” menu. Input data is a single 16S
Type strain and reference strain
There is significant confusion between bacterial type strains and reference strains. The type strain is defined in the context of formal bacterial taxonomy whereas reference
Bacterial identification in clinical diagnostic laboratories using 16S rRNA sequences
Bacterial infection may be caused by either new species or novel genetic variants in known bacteria that cannot be identified by conventional methods. 16S rRNA (16S)
[Tutorial] Exploring kimchi microbiota
Kimchi is a traditional side dish made from salted and fermented vegetables. When the fermentation is right, the pH of the cabbage kimchi reaches ~4.2.
Taxonomy of Clostridium clusters XIVa and IV
Clostridium clusters XIVa and IV are groups of bacteria that have been known as major players in the human microbiome(Hold et al., 2002;Frank et al.,
Starting EzBioCloud with new whole genome data
Welcome to EzBioCloud’s Whole Genome (WG) Analysis service. We assume that you have a new WG data in EzBioCloud cloud system either from genome assembly
EzBioCloud Genome Database
The EzBioCloud Genome Database is a part of EzBioCloud.net. It is maintained by ChunLab, Inc. to provide best-curated genome database of Bacteria and Archaea. Data
MTP (Microbiome Taxonomic Profile)
MTP (Microbiome Taxonomic Profile) is a unit of data that contains the taxonomic profile of a sample. At present, we provide MTP for bacterial and
[Tutorial] Identifying a bacterial strain using a genome sequence
Welcome! The purpose of this tutorial is to get familiar with EzBioCloud’s many functions, and to be able to apply that knowledge to a scenario
[Quiz] Identification of bacterium in a probiotic product
Probiotics are defined as live microorganisms that are thought to provide health benefits when consumed. The most popular probiotic organisms are bacteria belonging to a
EzBioCloud 16S database
Publications that introduced the EzBioCloud 16S database Our database has been introduced in the following three publications (The numbers of citations are as of Mar.
Taxonomic group
“Taxonomic group” in EzBioCloud 16S database Even though 16S rRNA gene has been widely used in the classification and identification of Bacteria and Archaea, it has
About EzBioCloud.net
EzBioCloud is ChunLab’s data and analytics portal focusing on taxonomy, ecology, genomics, metagenomics, and microbiome of Bacteria and Archaea. The service runs on the Amazon
