Microbiome standards are important both for the evaluation and effective standardization of methodologies used in microbiome sequencing and bioinformatics analysis. In this document, the genomes (strains) included in two Microbiome Standard products, ATCC® MSA-1002™ or ATCC® MSA-1003™ commercially distributed by American Type Culture Collection (ATCC®)*, were identified using the TrueBac ID system and the detailed results are outlined below.
If you already have 16S-NGS data generated with the ATCC Microbiome Standards, you can directly analyze them using the EzBioCloud Microbiome portal. The detailed instructions are here.
20 Strain Mix Genomic Material
Product’s Website: ATCC® MSA-1002™ or ATCC® MSA-1003™
The detailed results of TrueBac ID cloud system analysis, including identification and gene profiles of antibiotic resistance and pathogenicity, are available here.
| Original designations | Updated designations by ATCC [as of Aug 8, 2021] | Identification made by TrueBac ID | Average Nucleotide Identity (ANI%) to type strain |
| Acinetobacter baumannii ATCC 17978 | Acinetobacter baumannii (ATCC 17978) | Acinetobacter baumannii | 97.92 |
| Actinomyces odontolyticus ATCC 17982 | Schaalia odontolytica (ATCC 17982) | DS264586_s | 99.98 |
| Bacillus cereus ATCC 10987 | Bacillus pacificus (ATCC 10987) | Bacillus pacificus | 99.84 |
| Bacteroides vulgatus ATCC 8482 | Bacteroides vulgatus (ATCC 8482) | Bacteroides vulgatus | 99.82 |
| Bifidobacterium adolescentis ATCC 15703 | Bifidobacterium adolescentis (ATCC 15703) | Bifidobacterium adolescentis | 99.96 |
| Clostridium beijerinckii ATCC 35702 | Clostridium beijerinckii (ATCC 35702) | Clostridium beijerinckii group | 97.56% to Clostridium diolis |
| Deinococcus radiodurans ATCC BAA-816 | Deinococcus radiodurans (ATCC BAA-816) | Deinococcus radiodurans | 99.95 |
| Enterococcus faecalis ATCC 47077 | Enterococcus faecalis (ATCC 47077) | Enterococcus faecalis | 99.09 |
| Escherichia coli ATCC 700926 | Escherichia coli (ATCC 700926) | Escherichia coli | 97.21 |
| Helicobacter pylori ATCC 700392 | Helicobacter pylori (ATCC 700392) | Helicobacter pylori | 95.62 |
| Lactobacillus gasseri ATCC 33323 | Lactobacillus gasseri (ATCC 33323) | Lactobacillus gasseri | 99.96 |
| Neisseria meningitidis ATCC BAA-335 | Neisseria meningitidis (ATCC BAA-335) | Neisseria meningitidis | 97.04 |
| Porphyromonas gingivalis ATCC 33277 | Porphyromonas gingivalis (ATCC 33277) | Porphyromonas gingivalis | 99.82 |
| Propionibacterium acnes ATCC 11828 | Cutibacterium acnes (ATCC 11828) | Cutibacterium acnes subsp. defendens | 100 |
| Pseudomonas aeruginosa ATCC 9027 | Pseudomonas aeruginosa (ATCC 9027) | CP000744_s | 98.93 |
| Rhodobacter sphaeroides ATCC 17029 | Rhodobacter sphaeroides (ATCC 17029) | Rhodobacter sphaeroides group | 98.02% to Rhodobacter megalophilus |
| Staphylococcus aureus ATCC BAA-1556 | Staphylococcus aureus (ATCC BAA-1556) | Staphylococcus aureus subsp. aureus | 99.84 |
| Staphylococcus epidermidis ATCC 12228 | Staphylococcus epidermidis (ATCC 12228) | Staphylococcus epidermidis | 99.46 |
| Streptococcus agalactiae ATCC BAA-611 | Streptococcus agalactiae (ATCC BAA-611) | Streptococcus agalactiae | 99.01 |
| Streptococcus mutans ATCC 700610 | Streptococcus mutans (ATCC 700610) | Streptococcus mutans | 99.34 |
*ATCC is the registered trademark of the American Type Culture Collection. Both of these products are distributed by ATCC and can be ordered directly from them here.
Original post Jan 29, 2019. Last updated on Aug. 17, 2021
