====================================== Removed Taxa ====================================== Taxon Name Status Rank ------------------------------------------------------------------------------------------ Lysobacterales VALID_NAME Order AM777983_g PHYLOTYPE Genus Ruminococcus_g5 PHYLOTYPE Genus Amycolatopsis albidiflava VALID_NAME Species Parasaccharibacter apium INVALID_NAME Species // ====================================== Changed Taxa ====================================== Previous Name Current Name Status Rank ------------------------------------------------------------------------------------------ AF370880_g Aestuariivirga PHYLOTYPE Genus AY654819_g Algihabitans PHYLOTYPE Genus FJ799356_g Thioflexithrix PHYLOTYPE Genus Jishengella Micromonospora VALID_NAME Genus PAC001046_g AP018536_g PHYLOTYPE Genus PAC001138_g QUHQ_g PHYLOTYPE Genus PAC001283_g QULQ_g PHYLOTYPE Genus Ruminococcus_g4 Mediterraneibacter PHYLOTYPE Genus ABST_s Glaciecola amylolytica PHYLOTYPE Species ADEP_s Gardnerella leopoldii PHYLOTYPE Species AKJY_s Chryseobacterium populi PHYLOTYPE Species AY056829_s QOWJ_s PHYLOTYPE Species AY654819_s Algihabitans albus PHYLOTYPE Species Clostridium glycyrrhizinilyticum Mediterraneibacter glycyrrhizinilyticus VALID_NAME Species Corynebacterium fournierii Corynebacterium fournieri VALID_NAME Species CP019058_s Gardnerella piotii PHYLOTYPE Species CP023344_s Nibricoccus aquaticus PHYLOTYPE Species Enterobacter aerogenes Klebsiella aerogenes VALID_NAME Species FJ675259_s CP025513_s PHYLOTYPE Species FJ799356_s Thioflexithrix psekupsensis PHYLOTYPE Species FJTZ_s Romboutsia hominis PHYLOTYPE Species FXUT_s Listeria costaricensis PHYLOTYPE Species Geobacillus caldoxylosilyticus Parageobacillus caldoxylosilyticus VALID_NAME Species Geobacillus thermantarcticus Parageobacillus thermantarcticus VALID_NAME Species Geobacillus thermoglucosidasius Parageobacillus thermoglucosidasius VALID_NAME Species Geobacillus toebii Parageobacillus toebii VALID_NAME Species GQ497249_s LBNL_s PHYLOTYPE Species GQ897622_s LT985808_s PHYLOTYPE Species GQ897841_s QUIQ_s PHYLOTYPE Species GU303932_s OLMH_s PHYLOTYPE Species HM035988_s Lactomassilus timonensis PHYLOTYPE Species Idiomarina aestuarii Pseudidiomarina aestuarii VALID_NAME Species Idiomarina aquimaris Pseudidiomarina aquimaris VALID_NAME Species Idiomarina atlantica Pseudidiomarina atlantica VALID_NAME Species Idiomarina donghaiensis Pseudidiomarina donghaiensis VALID_NAME Species Idiomarina halophila Pseudidiomarina halophila VALID_NAME Species Idiomarina homiensis Pseudidiomarina homiensis VALID_NAME Species Idiomarina insulisalsae Pseudidiomarina insulisalsae VALID_NAME Species Idiomarina marina Pseudidiomarina marina VALID_NAME Species Idiomarina maritima Pseudidiomarina maritima VALID_NAME Species Idiomarina planktonica Pseudidiomarina planktonica VALID_NAME Species Idiomarina salinarum Pseudidiomarina salinarum VALID_NAME Species Idiomarina sediminum Pseudidiomarina sediminum VALID_NAME Species Idiomarina tainanensis Pseudidiomarina tainanensis VALID_NAME Species Idiomarina taiwanensis Pseudidiomarina taiwanensis VALID_NAME Species Idiomarina woesei Pseudidiomarina woesei VALID_NAME Species JHEE_s Pseudomonas mosselii PHYLOTYPE Species Jishengella endophytica Micromonospora endophytica VALID_NAME Species JSXC_s Pectobacterium fontis PHYLOTYPE Species MVOG_s Bifidobacterium italicum PHYLOTYPE Species Mycobacterium chelonae Mycobacteroides chelonae VALID_NAME Species NQXW_s Megasphaera stantonii PHYLOTYPE Species PAC001033_s QTXK_s PHYLOTYPE Species PAC001045_s QTXS_s PHYLOTYPE Species PAC001046_s AP018536_s PHYLOTYPE Species PAC001143_s QUKC_s PHYLOTYPE Species PAC001160_s QUDC_s PHYLOTYPE Species PAC001164_s QUKS_s PHYLOTYPE Species PAC001189_s AP018533_s PHYLOTYPE Species PAC001256_s QSTA_s PHYLOTYPE Species PAC001283_s QULQ_s PHYLOTYPE Species PAC001292_s QTXV_s PHYLOTYPE Species PAC001305_s QUHQ_s PHYLOTYPE Species PAC001418_s QSNG_s PHYLOTYPE Species PAC001909_s QUDE_s PHYLOTYPE Species QJHL_s Flavobacterium hydrophilum PHYLOTYPE Species Ruminococcus faecis Mediterraneibacter faecis VALID_NAME Species Mycobacterium chelonae subsp. chelonae Mycobacteroides chelonae VALID_NAME Subspecies // =============================== Removed 16S rRNA Sequences =============================== Sequence Accession Taxon Name ------------------------------------------------------------------------------------------ AB002516 Streptococcus equi subsp. zooepidemicus AB009828 Hydrogenophilus thermoluteolus AB859253 Thermomonospora amylolytica AB894129 Methylocaldum marinum AB981049 Micromonospora endophytica ABST01000050 ABST_s ADEP01000012 ADEP_s AF201898 Streptococcus hyointestinalis AF538712 Roseomonas mucosa AJ717394 Suttonella ornithocola AY028260 Weissella soli AY056829 AY056829_s AY079156 Streptomyces koyangensis AY654819 AY654819_s AY817493 Marinococcus halotolerans AY989908 Pontibacter actiniarum CP019058 CP019058_s FJ675259 FJ675259_s FJ754319 Pseudoalteromonas donghaensis FJ799356 FJ799356_s FJTZ01000012 FJTZ_s GQ497249 GQ497249_s GQ897622 GQ897622_s GQ897841 GQ897841_s GU303932 GU303932_s HM035988 HM035988_s JHEE01000165 JHEE_s KJ572399 Sphingomonas aeria KM670031 Blastomonas fulva L37605 Staphylococcus epidermidis MF033446 Thauera hydrothermalis MF683040 Lactobacillus terrae MG780325 Mycobacterium chelonae subsp. gwanakae MG811574 Megasphaera stantonii NQXW01000039 NQXW_s PAC001033 PAC001033_s PAC001045 PAC001045_s PAC001046 PAC001046_s PAC001143 PAC001143_s PAC001160 PAC001160_s PAC001164 PAC001164_s PAC001189 PAC001189_s PAC001256 PAC001256_s PAC001283 PAC001283_s PAC001292 PAC001292_s PAC001304 PAC001304_s PAC001305 PAC001305_s PAC001418 PAC001418_s PAC001909 PAC001909_s X98395 Clostridium isatidis // ====================================== Added Taxa ======================================== Taxon Name Status Rank ------------------------------------------------------------------------------------------ Aestuariivirgaceae VALID_NAME Family Aestuariivirga VALID_NAME Genus Aestuarium VALID_NAME Genus Algihabitans VALID_NAME Genus AP018536_g PHYLOTYPE Genus Calidifontimicrobium VALID_NAME Genus Histidinibacterium VALID_NAME Genus Labilibaculum VALID_NAME Genus Lactomassilus INVALID_NAME Genus Limoniibacter VALID_NAME Genus LT963434_g PHYLOTYPE Genus Mediterraneibacter VALID_NAME Genus Meridianimarinicoccus VALID_NAME Genus Nibricoccus VALID_NAME Genus PAC001904_g PHYLOTYPE Genus Paradonghicola VALID_NAME Genus Parageobacillus VALID_NAME Genus Phycocomes VALID_NAME Genus Pseudidiomarina VALID_NAME Genus QUDE_g PHYLOTYPE Genus QUHQ_g PHYLOTYPE Genus QULQ_g PHYLOTYPE Genus Tepidibaculum VALID_NAME Genus Thioflexithrix VALID_NAME Genus Acidovorax monticola VALID_NAME Species Aeromicrobium lacus VALID_NAME Species Aestuariibaculum marinum VALID_NAME Species Aestuariivirga litoralis VALID_NAME Species Aestuarium zhoushanense VALID_NAME Species Aggregatibacter kilianii VALID_NAME Species Algihabitans albus VALID_NAME Species Amycolatopsis albidoflavus VALID_NAME Species Amycolatopsis cappadoca VALID_NAME Species Amycolatopsis panacis VALID_NAME Species Amycolatopsis vastitatis VALID_NAME Species Anaerobacillus alkaliphilus VALID_NAME Species AP017968_s PHYLOTYPE Species AP018533_s PHYLOTYPE Species AP018536_s PHYLOTYPE Species Arcobacter acticola VALID_NAME Species Aureimonas flava VALID_NAME Species Bifidobacterium avesanii VALID_NAME Species Bifidobacterium italicum VALID_NAME Species Calidifontimicrobium sediminis VALID_NAME Species Chitinophaga silvisoli VALID_NAME Species Chryseobacterium populi VALID_NAME Species Clostridium indicum VALID_NAME Species Cohnella faecalis VALID_NAME Species Corynebacterium fournieri VALID_NAME Species CP011567_s PHYLOTYPE Species CP014754_s PHYLOTYPE Species CP015596_s PHYLOTYPE Species CP022881_s PHYLOTYPE Species CP023057_s PHYLOTYPE Species CP025513_s PHYLOTYPE Species CP025624_s PHYLOTYPE Species CP025804_s PHYLOTYPE Species CP027235_s PHYLOTYPE Species CP029620_s PHYLOTYPE Species CP030092_s PHYLOTYPE Species CP030850_s PHYLOTYPE Species CP031194_s PHYLOTYPE Species CP032382_s PHYLOTYPE Species CP032514_s PHYLOTYPE Species CP032568_s PHYLOTYPE Species CP032931_s PHYLOTYPE Species Crenobacter cavernae VALID_NAME Species Dyadobacter flavus VALID_NAME Species Dyadobacter luticola VALID_NAME Species Dyadobacter terricola VALID_NAME Species Enterobacter chuandaensis VALID_NAME Species Enterobacter huaxiensis VALID_NAME Species Falsochrobactrum shanghaiense VALID_NAME Species Flavobacterium amnigenum VALID_NAME Species Flavobacterium cheongpyeongense VALID_NAME Species Flavobacterium hydrophilum VALID_NAME Species Gardnerella leopoldii VALID_NAME Species Gardnerella piotii VALID_NAME Species Gardnerella swidsinskii VALID_NAME Species Gelidibacter flavus VALID_NAME Species Glaciecola amylolytica VALID_NAME Species Halorubrum depositum VALID_NAME Species Halorubrum salsamenti VALID_NAME Species Halorussus litoreus VALID_NAME Species Histidinibacterium lentulum VALID_NAME Species Hymenobacter crusticola VALID_NAME Species Hymenobacter jeollabukensis VALID_NAME Species Hymenobacter segetis VALID_NAME Species Jiangella endophytica VALID_NAME Species Klebsiella aerogenes VALID_NAME Species Kocuria tytonis VALID_NAME Species Labilibaculum filiforme VALID_NAME Species Labilibaculum manganireducens VALID_NAME Species Lactobacillus salitolerans VALID_NAME Species Lactomassilus timonensis INVALID_NAME Species LBNL_s PHYLOTYPE Species LGQW_s PHYLOTYPE Species Limoniibacter endophyticus VALID_NAME Species Listeria costaricensis VALID_NAME Species LQXQ_s PHYLOTYPE Species LT549889_s PHYLOTYPE Species LT963434_s PHYLOTYPE Species LT985808_s PHYLOTYPE Species MAFC_s PHYLOTYPE Species Marinifilum breve VALID_NAME Species Marinimicrobium alkaliphilum VALID_NAME Species Marinobacterium boryeongense VALID_NAME Species Marinomonas piezotolerans VALID_NAME Species Mediterraneibacter faecis VALID_NAME Species Mediterraneibacter glycyrrhizinilyticus VALID_NAME Species Mediterraneibacter massiliensis VALID_NAME Species MEJG_s PHYLOTYPE Species Meridianimarinicoccus roseus VALID_NAME Species Microbacterium ureisolvens VALID_NAME Species Micromonospora craniellae VALID_NAME Species Microvirga flavescens VALID_NAME Species Mycobacteroides chelonae VALID_NAME Species Nibricoccus aquaticus VALID_NAME Species OLMH_s PHYLOTYPE Species Pandoraea fibrosis VALID_NAME Species Parabacteroides acidifaciens VALID_NAME Species Paracoccus halotolerans VALID_NAME Species Paracoccus suum VALID_NAME Species Paradonghicola geojensis VALID_NAME Species Parageobacillus caldoxylosilyticus VALID_NAME Species Parageobacillus thermantarcticus VALID_NAME Species Parageobacillus thermoglucosidasius VALID_NAME Species Parageobacillus toebii VALID_NAME Species Pararhodobacter marinus VALID_NAME Species Pectobacterium fontis VALID_NAME Species Phenylobacterium terrae VALID_NAME Species Photobacterium andalusiense VALID_NAME Species Photobacterium malacitanum VALID_NAME Species Phycocomes zhengii VALID_NAME Species Phytoactinopolyspora halotolerans VALID_NAME Species Prevotella phocaeensis VALID_NAME Species Proteus cibi VALID_NAME Species Proteus faecis VALID_NAME Species Pseudaminobacter arsenicus VALID_NAME Species Pseudidiomarina aestuarii VALID_NAME Species Pseudidiomarina aquimaris VALID_NAME Species Pseudidiomarina atlantica VALID_NAME Species Pseudidiomarina donghaiensis VALID_NAME Species Pseudidiomarina halophila VALID_NAME Species Pseudidiomarina homiensis VALID_NAME Species Pseudidiomarina insulisalsae VALID_NAME Species Pseudidiomarina marina VALID_NAME Species Pseudidiomarina maritima VALID_NAME Species Pseudidiomarina planktonica VALID_NAME Species Pseudidiomarina salinarum VALID_NAME Species Pseudidiomarina sediminum VALID_NAME Species Pseudidiomarina tainanensis VALID_NAME Species Pseudidiomarina taiwanensis VALID_NAME Species Pseudidiomarina woesei VALID_NAME Species Pseudomonas laurylsulfatiphila VALID_NAME Species Pseudomonas laurylsulfativorans VALID_NAME Species Pseudomonas mangrovi VALID_NAME Species Pseudomonas pharmacofabricae VALID_NAME Species Pseudomonas sichuanensis VALID_NAME Species QOWJ_s PHYLOTYPE Species QQHX_s PHYLOTYPE Species QRME_s PHYLOTYPE Species QRMP_s PHYLOTYPE Species QRMU_s PHYLOTYPE Species QROH_s PHYLOTYPE Species QRZZ_s PHYLOTYPE Species QSEU_s PHYLOTYPE Species QSNG_s PHYLOTYPE Species QSNZ_s PHYLOTYPE Species QSQT_s PHYLOTYPE Species QSTA_s PHYLOTYPE Species QTXI_s PHYLOTYPE Species QTXK_s PHYLOTYPE Species QTXS_s PHYLOTYPE Species QTXV_s PHYLOTYPE Species QTYC_s PHYLOTYPE Species QUDC_s PHYLOTYPE Species QUDE_s PHYLOTYPE Species QUDI_s PHYLOTYPE Species QUDT_s PHYLOTYPE Species QUHA_s PHYLOTYPE Species QUHC_s PHYLOTYPE Species QUHH_s PHYLOTYPE Species QUHQ_s PHYLOTYPE Species QUIQ_s PHYLOTYPE Species QUJU_s PHYLOTYPE Species QUKC_s PHYLOTYPE Species QUKS_s PHYLOTYPE Species QULA_s PHYLOTYPE Species QULQ_s PHYLOTYPE Species Rufibacter sediminis VALID_NAME Species Skermanella mucosa VALID_NAME Species Sphingobacterium athyrii VALID_NAME Species Sphingomonas montis VALID_NAME Species Sphingosinicella humi VALID_NAME Species Streptomyces inhibens VALID_NAME Species Streptomyces roseifaciens VALID_NAME Species Tepidibaculum saccharolyticum VALID_NAME Species Tepidimonas alkaliphilus VALID_NAME Species Tepidimonas sediminis VALID_NAME Species Thalassococcus profundi VALID_NAME Species Thioflexithrix psekupsensis VALID_NAME Species Trichococcus shcherbakoviae VALID_NAME Species Zavarzinia aquatilis VALID_NAME Species Zhongshania marina VALID_NAME Species Corynebacterium diphtheriae subsp. diphtheriae VALID_NAME Subspecies Corynebacterium diphtheriae subsp. lausannense VALID_NAME Subspecies Cutibacterium acnes subsp. elongatum VALID_NAME Subspecies // ================================ Added 16S rRNA Sequences ================================ Sequence Accession Taxon Name ------------------------------------------------------------------------------------------ AB682353 Marinococcus halotolerans AP017928 Methylocaldum marinum AP017968 AP017968_s AP018533 AP018533_s AP018536 AP018536_s AP018558 Hydrogenophilus thermoluteolus CLG_10006944 PAC001304_s CP011567 CP011567_s CP014754 CP014754_s CP015596 CP015596_s CP016786 Clostridium isatidis CP017326 Weissella soli CP020083 Blastomonas fulva CP021235 Pontibacter actiniarum CP022881 CP022881_s CP023057 CP023057_s CP024610 Lactobacillus terrae CP025513 CP025513_s CP025624 CP025624_s CP025804 CP025804_s CP027235 CP027235_s CP029331 Thauera hydrothermalis CP029462 Megasphaera stantonii CP029620 CP029620_s CP029984 Gardnerella leopoldii CP030092 CP030092_s CP030850 CP030850_s CP031194 CP031194_s CP031516 Mycobacterium chelonae subsp. gwanakae CP031742 Streptomyces koyangensis CP032090 Pseudoalteromonas donghaensis CP032382 CP032382_s CP032402 Thermomonospora amylolytica CP032514 CP032514_s CP032568 CP032568_s CP032931 CP032931_s HQ263243 Zhongshania marina KM243752 Limoniibacter endophyticus KP056307 Thioflexithrix psekupsensis KR185328 Paradonghicola geojensis KT261641 Halorussus litoreus KT347097 Hymenobacter crusticola KU051446 Bifidobacterium avesanii KU507537 Arcobacter acticola KU513826 Gelidibacter flavus KX129748 Pseudaminobacter arsenicus KX172130 Aestuariibaculum marinum KX376706 Halorubrum salsamenti KX376712 Halorubrum depositum KX608880 Amycolatopsis cappadoca KX712083 Pandoraea fibrosis KX832989 Marinobacterium boryeongense KX890235 Aestuarium zhoushanense KX910087 Pseudomonas pharmacofabricae KX943591 Photobacterium andalusiense KX943603 Photobacterium malacitanum KX989463 Histidinibacterium lentulum KY039331 Paracoccus halotolerans KY039334 Microbacterium ureisolvens KY117465 Dyadobacter flavus KY117482 Dyadobacter terricola KY313411 Acidovorax monticola KY352637 Thalassococcus profundi KY462012 Pseudomonas laurylsulfatiphila KY509308 Labilibaculum filiforme KY509310 Labilibaculum manganireducens KY660624 Rufibacter sediminis KY937208 Dyadobacter luticola KY979511 Phytoactinopolyspora halotolerans LBNL01000020 LBNL_s LC032128 Jiangella endophytica LC127508 Lactobacillus salitolerans LC315197 Hymenobacter jeollabukensis LC315611 Hymenobacter segetis LGQW01000006 LGQW_s LN610499 Anaerobacillus alkaliphilus LN881607 Mediterraneibacter massiliensis LN998069 Prevotella phocaeensis LQXQ01000144 LQXQ_s LS451231 Trichococcus shcherbakoviae LT158289 Skermanella mucosa LT549889 LT549889_s LT621741 Amycolatopsis vastitatis LT963434 LT963434_s LT964739 Lactomassilus timonensis LT985808 LT985808_s LT990688 Corynebacterium diphtheriae subsp. lausannense MAFC01000010 MAFC_s MF509190 Tepidimonas sediminis MF509266 Tepidimonas alkaliphilus MF554631 Pseudomonas laurylsulfativorans MF685296 Zavarzinia aquatilis MF942877 Marinifilum breve MG065696 Phycocomes zhengii MG200153 Micromonospora craniellae MG204702 Sphingomonas montis MG269469 Proteus faecis MG547562 Kocuria tytonis MG561874 Algihabitans albus MG661736 Phenylobacterium terrae MG696220 Sphingobacterium athyrii MG753794 Sphingosinicella humi MG799855 Meridianimarinicoccus roseus MG827298 Glaciecola amylolytica MG913248 Proteus cibi MG913993 Marinomonas piezotolerans MG947385 Streptomyces roseifaciens MH013305 Flavobacterium amnigenum MH046066 Calidifontimicrobium sediminis MH137036 Pseudomonas mangrovi MH160776 Aggregatibacter kilianii MH193004 Clostridium indicum MH200617 Tepidibaculum saccharolyticum MH266043 Amycolatopsis panacis MH279470 Marinimicrobium alkaliphilum MH332383 Pararhodobacter marinus MH371374 Aestuariivirga litoralis MH513946 Aeromicrobium lacus MH542628 Microvirga flavescens MH667578 Paracoccus suum MH680580 Crenobacter cavernae MH697664 Parabacteroides acidifaciens MH727580 Streptomyces inhibens MH734907 Chitinophaga silvisoli MH789467 Falsochrobactrum shanghaiense MH830517 Cohnella faecalis MH898658 Gardnerella swidsinskii MH898664 Gardnerella piotii MH910344 Aureimonas flava MK049964 Enterobacter huaxiensis MK049966 Enterobacter chuandaensis OLMH01000002 OLMH_s PGFU01000035 Sphingomonas aeria QJHK01000040 Flavobacterium cheongpyeongense QKRC01000001 Cutibacterium acnes subsp. elongatum QKVM01000121 Pseudomonas sichuanensis QOWJ01000029 QOWJ_s QQHX01000012 QQHX_s QRME01000001 QRME_s QRMP01000005 QRMP_s QRMU01000002 QRMU_s QROH01000022 QROH_s QRZZ01000016 QRZZ_s QSEU01000032 QSEU_s QSNG01000001 QSNG_s QSNZ01000015 QSNZ_s QSQT01000022 QSQT_s QSTA01000002 QSTA_s QTXI01000062 QTXI_s QTXK01000003 QTXK_s QTXS01000002 QTXS_s QTXV01000017 QTXV_s QTYC01000006 QTYC_s QUDC01000017 QUDC_s QUDE01000036 QUDE_s QUDI01000080 QUDI_s QUDT01000003 QUDT_s QUHA01000002 QUHA_s QUHC01000016 QUHC_s QUHH01000003 QUHH_s QUHQ01000001 QUHQ_s QUIQ01000024 QUIQ_s QUJU01000002 QUJU_s QUKC01000014 QUKC_s QUKS01000002 QUKS_s QULA01000006 QULA_s QULQ01000007 QULQ_s UGVN01000001 Roseomonas mucosa UHDF01000003 Staphylococcus epidermidis UHFI01000001 Streptococcus equi subsp. zooepidemicus UHFN01000007 Streptococcus hyointestinalis UHIC01000001 Suttonella ornithocola //