Powered by Precision,
Driven by Quality

Subscribe To Our Newsletter

Get updates and learn from the best

Prokaryotic (bacterial or archaeal) species are now generally defined by genomic methods such as average nucleotide identity (ANI). A genomospecies is a species that can be differentiated from other species using genotypic means, or more precisely, a genomic method. A genomospecies can be a formally recognized species if it meets the following conditions:

  • It shows differential characteristics that separate it from other species.
  • Its description is published in a scientific journal.
  • A pure culture that serves as the type strain is available without any restriction.
  • The designated type strain is deposited into two different culture collections in two different countries.

If a species cannot meet any of the above conditions, we can call it genomospecies (=genospecies). In other words, a genomospecies is a tentatively novel species that is supported by genomic evidence such as ANI.

Two genomospecies, CP014326_s and CP012646_s, are evident in this dendrogram based on OrthoANI.

 * Note that the genome sequences of CP014326_s and CP012646_s are labeled as Streptococcus mitis in NCBI database (CP014326, CP012646). However, ANI values between the type strain of Streptococcus mitis and these strains are <95%, the cutoff for the species boundary (Chun et al., 2018).

 


Last edited April 23, 2018

Subscribe To Our Newsletter

Get updates and learn from the best

More To Explore

CLgenomics Software

CLgenomics is a standalone desktop software specifically designed for bacterial genome analysis. This program has a powerful multi-genome browser, which enables rapid and responsive exploration

How to use EzBioCloud 16S database with MOTHUR

MOTHUR is a widely used, open-source bioinformatics pipeline for microbiome analysis (https://www.mothur.org/). In this document, we provide a guide for using EzBioCloud’s 16S database with

Share This Post

Share on facebook
Share on linkedin
Share on twitter
Share on email
small_c_popup.png

Have a Question? Let's have a chat?

We're here to answer any question you might have

small_c_popup.png

Have a Question? Let's have a chat?

We're here to answer any question you might have

small_c_popup.png

Stay up to date

Keep up with our latest developments