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EzBioCloud Resources

Everything You Need For Microbial Bioinformatics

Learn how to perform bioinformatics, taxonomy, typing and microbiome analysis on bacterial genomics. Also, learn the scientific background of some of the most widely used tools.

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Microbiome | MetagenomicsIsolate GenomicsIsolate IdentificationTrueBacEzBioCloud

[UBCG] example commands

Run these lines to generate bcg files from fasta files. java -jar UBCG.jar extract -bcg_dir bcg -i fasta/CP012646_s_GCA_001281025.1_KCOM_1350.fasta -label “CP012646_s KCOM 1350” -acc “GCA_001281025.1” -taxon

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Ortholog and its detection

Definition of Homology, Orthology and Paralogy Homology is a term used when two genes share a common ancestor. The two genes are considered “homologous” or “not homologous” depending

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[UBCG] Gene set

This document describes the gene set included the current version of UBCG phylogenomics pipeline [Learn more]. Gene COG category COG ID HMM profile Function alaS

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[OAU] Mac OSX

Step-by-step guide for Apple Mac OSX users First, download necessary files OAU.jar file from here. USEARCH 32bit version for OSX from here. Example file from

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Gene frequency plot in pan-genome

All potential orthologous protein-coding  genes (=CDSs) are clustered into non-redundant gene sets after pan-genome calculation to generate “Pan-genome Orthologous Groups (POGs)”. Obviously, a core part

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