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This document describes the gene set included the current version of UBCG phylogenomics pipeline [Learn more].

GeneCOG categoryCOG IDHMM profileFunction
alaSJCOG0013TIGR00344Alanine-tRNA ligase
argSJCOG0018TIGR00456Arginine-tRNA ligase
aspSJCOG0173TIGR00459Aspartate-tRNA ligase
cgtADLCOG0536TIGR02729/PF01018GTPase ObgE/CgtA
coaEHCOG0237TIGR00152Dephospho-CoA kinase
cysSJCOG0215TIGR00435Cysteine-tRNA ligase
dnaALCOG0593TIGR00362/PF00308Chromosomal replication initiator protein DnaA
dnaGLCOG0358TIGR01391DNA primase
dnaXLCOG2812TIGR02397DNA polymerase III subunit gamma
engARCOG1160TIGR03594GTPase Der
ffhUCOG0541TIGR00959Signal recognition particle protein
fmtJCOG0223TIGR00460Methionyl-tRNA formyltransferase
frrJCOG0233TIGR00496Ribosome-recycling factor
ftsYUCOG0552TIGR00064Signal recognition particle receptor FtsY
gmkFCOG0194TIGR03263/PF00625Guanylate kinase
hisSJCOG0124TIGR00442Histidine-tRNA ligase
ileSJCOG0060TIGR00392Isoleucine-tRNA ligase 1
infBJCOG0532TIGR00487Translation initiation factor IF-2
infCJCOG0290TIGR00168Translation initiation factor IF-3
ksgAJCOG0030TIGR00755Ribosomal RNA small subunit methyltransferase A
lepAJCOG0481TIGR01393Elongation factor 4
leuSJCOG0495TIGR00396Leucine-tRNA ligase
ligALCOG0272TIGR00575DNA ligase
nusAKCOG0195TIGR01953Transcription termination/antitermination protein NusA
nusGKCOG0250TIGR00922Transcription termination/antitermination protein NusG
pgkGCOG0126PF00162Phosphoglycerate kinase
pheSJCOG0016TIGR00468Phenylalanine-tRNA ligase alpha subunit
pheTJCOG0073TIGR00472Phenylalanine-tRNA ligase beta subunit
prfAJCOG0216TIGR00019Peptide chain release factor 1
pyrGFCOG0504TIGR00337CTP synthase
recALCOG0468TIGR02012DNA recombination and repair protein
rbfAJCOG0858TIGR0008230S ribosome-binding factor
rncKCOG0571TIGR02191Ribonuclease 3
rplAJCOG0081TIGR0116950S ribosomal protein L1
rplBJCOG0090TIGR0117150S ribosomal protein L2
rplCJCOG0087TIGR03625/PF0029750S ribosomal protein L3
rplDJCOG0088TIGR0395350S ribosomal protein L4
rplEJCOG0094PF0028150S ribosomal protein L5
rplFJCOG0097TIGR03654/PF0034750S ribosomal protein L6
rplIJCOG0359TIGR00158/PF0128150S ribosomal protein L9
rplJJCOG0244PF0046650S ribosomal protein L10
rplKJCOG0080TIGR0163250S ribosomal protein L11
rplLJCOG0222TIGR0085550S ribosomal protein L7/L12
rplMJCOG0102TIGR0106650S ribosomal protein L13
rplNJCOG0093TIGR0106750S ribosomal protein L14
rplOJCOG0200TIGR0107150S ribosomal protein L15
rplPJCOG0197TIGR0116450S ribosomal protein L16
rplQJCOG0203TIGR0005950S ribosomal protein L17
rplRJCOG0256TIGR0006050S ribosomal protein L18
rplSJCOG0335TIGR0102450S ribosomal protein L19
rplTJCOG0292TIGR0103250S ribosomal protein L20
rplUJCOG0261TIGR0006150S ribosomal protein L21
rplVJCOG0091TIGR0104450S ribosomal protein L22
rplWJCOG0089PF0027650S ribosomal protein L23
rplXJCOG0198TIGR0107950S ribosomal protein L24
rpmAJCOG0211TIGR0006250S ribosomal protein L27
rpmCJCOG0255TIGR0001250S ribosomal protein L29
rpmIJCOG0291TIGR0000150S ribosomal protein L35
rpoAKCOG0202TIGR02027DNA-directed RNA polymerase subunit alpha
rpoBKCOG0085TIGR02013DNA-directed RNA polymerase subunit beta
rpoCKCOG0086TIGR02386DNA-directed RNA polymerase subunit beta’
rpsBJCOG0052TIGR0101130S ribosomal protein S2
rpsCJCOG0092TIGR0100930S ribosomal protein S3
rpsDJCOG0522TIGR0101730S ribosomal protein S4
rpsEJCOG0098TIGR0102130S ribosomal protein S5
rpsFJCOG0360TIGR00166/PF0125030S ribosomal protein S6
rpsGJCOG0049TIGR0102930S ribosomal protein S7
rpsHJCOG0096PF0041030S ribosomal protein S8
rpsIJCOG0103PF0038030S ribosomal protein S9
rpsJJCOG0051TIGR0104930S ribosomal protein S10
rpsKJCOG0100TIGR0363230S ribosomal protein S11
rpsLJCOG0048TIGR0098130S ribosomal protein S12
rpsMJCOG0099TIGR0363130S ribosomal protein S13
rpsOJCOG0184TIGR0095230S ribosomal protein S15
rpsPJCOG0228TIGR0000230S ribosomal protein S16
rpsQJCOG0186TIGR0363530S ribosomal protein S17
rpsRJCOG0238TIGR0016530S ribosomal protein S18
rpsSJCOG0185TIGR0105030S ribosomal protein S19
rpsTJCOG0268TIGR0002930S ribosomal protein S20
secAUCOG0653TIGR00963Protein translocase subunit SecA
secGUCOG1314TIGR00810Protein-export membrane protein SecG
secYUCOG0201TIGR00967Protein translocase subunit SecY
serSJCOG0172TIGR00414Serine-tRNA ligase
smpBOCOG0691TIGR00086SsrA-binding protein
tigOCOG0544TIGR00115Trigger factor
tilSJCOG0037TIGR02432tRNA(Ile)-lysidine synthase
truBJCOG0130TIGR00431tRNA pseudouridine synthase B
tsaDJCOG0533TIGR03723tRNA N6-adenosine threonylcarbamoyltransferase
tsfJCOG0264TIGR00116/PF00889Elongation factor Ts
uvrBLCOG0556TIGR00631UvrABC system protein B
ybeYJCOG0319TIGR00043Endoribonuclease YbeY
ychFJCOG0012TIGR00092Ribosome-binding ATPase YchF
Location of UBCG genes on Escherichia coli K12 genome

Last updated April 5, 2018

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